Revision as of 13:44, 4 January 2018

What is SPARQL

SPARQL is a query language for semantic databases using the Resource Description Framework (RDF) format

Tutorial

There are quite a few tutorials out there for SPARQL e.g.

This tutorial is for people which are new to semantic concepts but would like to use an example with a fair amount of data but not too much of complexity in the structure of the data.

Semantic Concepts

Personally I learned Semantic Concepts using Semantic MediaWiki see

When using SPARQL a tutorial needs to get a slightly different touch, so for those who know the talk above I'll explain some key concepts based on an example using:

Countries
Towns
Municipal Units

Triples

A semantic statement has the form

<subject> <predicate> <object>

e.g.

Dubai is-located-in AE

is such a semantic statement which is also called a Triple.

The natural language statement "Dubai is located in United Arab Emirates" is purposely slightly modified to a more "computer-ready" form. The predicate has been written as is-located-in to make it a proper Identifier. And the country-name "United Arab Emirates" has been replaced by its two letter United Nations Location Code AE. A triple has a natural graph representation:

TripleStore

A Triplestore is a database that can store and query triples. In fact for educational purposes I have written a simple Triplestore myself:

https://github.com/BITPlan/org.sidif.triplestore

For that simple triplestore the triples are supplied in Simple Data Interchange Format. Again that format is mostly for educational purposes although it can also be used for small usecases with just a few thousand triples. Please also note that there is no SPARQL support in that project.

For more than a non-educational use a Triplestore is needed that can handle larger amounts of data and support SPARQL. The Wikipedia List of Subject-Predicate-Object Databases shows you some options. For this tutorial we'll use Blazegraph.

Setting up the Blazegraph Triple Store

You need Java to be installed on you machine.

Download the blazegraph.jar file from https://www.blazegraph.com/download/ and start it with

java -jar blazegraph.jar

In fact it's better if you start the jar file with an option to allow bigger xml files to be handled:

java -Djdk.xml.entityExpansionLimit=0 -jar blazegraph.jar

otherwise you might run into the error:

org.openrdf.rio.RDFParseException: JAXP00010001: The parser has encountered more than "64000" entity expansions in this document; this is the limit imposed by the JDK

you should see

Welcome to the Blazegraph(tm) Database.

Go to http://localhost:9999/blazegraph/ to get started.

And you might want to do just that and click that link.

Where Blazegraph stores it's data

The default setting for Blazegraphs journal file is to use blazegraph.jnl in the directory where you started the jar file. On my Mac OS Laptop the initial file size is some 200 MBytes.

ls -l blazegraph.jnl 
-rw-r--r--  1 wf  staff  209715200  4 Jan 11:50 blazegraph.jnl

The Blazegraph Web UI

The Web-UI shows the Tabs:

WELCOME
QUERY
UPDATE
EXPLORE
NAMESPACES
STATUS
PERFORMANCE

Let's start with the UPDATE tab to load some sample data.

The sample Data

The human readable form of some of our sample data and their description is available at:

RDF Version of the data

You might want to download and unzip http://unlocode.rkbexplorer.com/models/dump.tgz. The result should be a directory with the following content:

pan:models wf$ls -l
total 31832
-rw-r--r--  1 wf  staff       265  4 Jan 07:27 catalog-v001.xml
-rw-r--r--@ 1 wf  staff     42194 18 Feb  2009 unlocode-countries.rdf
-rw-r--r--@ 1 wf  staff    228389 18 Feb  2009 unlocode-municipalunits.rdf
-rw-r--r--@ 1 wf  staff  16017733 18 Feb  2009 unlocode-towns.rdf

Now drag and drop the three files:

unlocode-countries.rdf
unlocode-municipalunits.rdf
unlocode-towns.rdf

one after another into the field with the text

(Type in or drag a file containing RDF data, ...

and click the update button below the field after each drag&drop operation. The output will be

Modified: 484
Milliseconds: 430
Modified: 1917
Milliseconds: ...
Running update: 287
Modified: 239567
Milliseconds: 2260

The Milliseconds may vary on your machine. If you run into the 64000 entity limit you may need to restart your blazegraph.jar file with the Java VM options outlined above.

SPARQL Queries

Select all Triples

Now our environment should be ready to hit the "QUERY" tab and enter our first SPARQL query:

SELECT * 
WHERE {
  ?subject ?predicate ?object
}

Which will have total results of 242375 triples, displaying the first 50:

subject	                                        predicate	                                        object
<http://unlocode.rkbexplorer.com/id/AEDHF>	<http://www.aktors.org/ontology/portal#has-longitude>	54.5333333
<http://unlocode.rkbexplorer.com/id/AEDHF>	<http://www.aktors.org/ontology/portal#is-located-in>	<http://unlocode.rkbexplorer.com/id/AE>
<http://unlocode.rkbexplorer.com/id/AEDHF>	<http://www.aktors.org/ontology/support#has-pretty-name>	Al Dhafra
<http://unlocode.rkbexplorer.com/id/AEDHF>	rdf:type	<http://www.aktors.org/ontology/portal#Town>
<http://unlocode.rkbexplorer.com/id/AEDUY>	<http://www.aktors.org/ontology/portal#has-latitude>	25.7780637
<http://unlocode.rkbexplorer.com/id/AEDUY>	<http://www.aktors.org/ontology/portal#has-longitude>	55.9310912
<http://unlocode.rkbexplorer.com/id/AEDUY>	<http://www.aktors.org/ontology/portal#is-located-in>	<http://unlocode.rkbexplorer.com/id/AE>
<http://unlocode.rkbexplorer.com/id/AEDUY>	<http://www.aktors.org/ontology/support#has-pretty-name>	Ras Zubbaya (Ras Dubayyah)
<http://unlocode.rkbexplorer.com/id/AEDUY>	rdf:type	<http://www.aktors.org/ontology/portal#Town>
<http://unlocode.rkbexplorer.com/id/AEDXB>	<http://www.aktors.org/ontology/portal#has-latitude>	25.2500000
<http://unlocode.rkbexplorer.com/id/AEDXB>	<http://www.aktors.org/ontology/portal#has-longitude>	55.2666666
<http://unlocode.rkbexplorer.com/id/AEDXB>	<http://www.aktors.org/ontology/portal#is-located-in>	<http://unlocode.rkbexplorer.com/id/AE>
<http://unlocode.rkbexplorer.com/id/AEDXB>	<http://www.aktors.org/ontology/support#has-pretty-name>	Dubai
<http://unlocode.rkbexplorer.com/id/AEDXB>	rdf:type	<http://www.aktors.org/ontology/portal#Town>

Now you can see that RDF unlike SiDiF mostly uses lenghty URLs to express things. So the Triple for Dubai being in AE gets to be:

<http://unlocode.rkbexplorer.com/id/AEDXB>	<http://www.aktors.org/ontology/portal#is-located-in>	<http://unlocode.rkbexplorer.com/id/AE>

And there are multiple triples for the subject <http://unlocode.rkbexplorer.com/id/AEDXB> So lets select only those.

Select by subject

SELECT * 
WHERE {
  <http://unlocode.rkbexplorer.com/id/AEDXB> ?predicate ?object
}

predicate	object
<http://www.aktors.org/ontology/portal#has-latitude>	25.2500000
<http://www.aktors.org/ontology/portal#has-longitude>	55.2666666
<http://www.aktors.org/ontology/portal#is-located-in>	<http://unlocode.rkbexplorer.com/id/AE>
<http://www.aktors.org/ontology/support#has-pretty-name>	Dubai
rdf:type	<http://www.aktors.org/ontology/portal#Town>

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