Difference between revisions of "Wikidata Import 2023-04-26"
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| Line 613: | Line 613: | ||
> <fileNamePattern>PATH/TO/LOGS/rdf-query-service.%d{yyyy-MM-dd}.%i.log.gz</fileNamePattern> | > <fileNamePattern>PATH/TO/LOGS/rdf-query-service.%d{yyyy-MM-dd}.%i.log.gz</fileNamePattern> | ||
</source> | </source> | ||
| + | ==== restart blazegraph ==== | ||
<source lang='bash'> | <source lang='bash'> | ||
pgrep -fla blazegraph-service | pgrep -fla blazegraph-service | ||
pkill -f blazegraph-service | pkill -f blazegraph-service | ||
rm blazegraph.log | rm blazegraph.log | ||
| + | export LOG_CONFIG=/hd/eneco/wikidata/logback.xml | ||
| + | nohup service/runBlazegraph.sh 2>&1 > blazegraph.log& | ||
</source> | </source> | ||
Revision as of 08:41, 3 May 2023
Download ~9 hours
Download Options
https://dumps.wikimedia.org/wikidatawiki/entities
latest-all.json.bz2 19-Apr-2023 19:01 81437052900 latest-all.json.gz 26-Apr-2023 06:43 123717867013 latest-all.nt.bz2 20-Apr-2023 09:17 158037435620 latest-all.nt.gz 19-Apr-2023 15:33 204694424758 latest-all.ttl.bz2 19-Apr-2023 20:37 101383518288 latest-all.ttl.gz 26-Apr-2023 08:18 123942927864 latest-lexemes.json.bz2 26-Apr-2023 03:51 297892886 latest-lexemes.json.gz 26-Apr-2023 03:49 407135019 latest-lexemes.nt.bz2 21-Apr-2023 23:33 768095633 latest-lexemes.nt.gz 21-Apr-2023 23:28 1008192049 latest-lexemes.ttl.bz2 21-Apr-2023 23:29 433401231 latest-lexemes.ttl.gz 21-Apr-2023 23:25 540610049 latest-truthy.nt.bz2 21-Apr-2023 17:41 35992719959 latest-truthy.nt.gz 21-Apr-2023 14:24 59704444949
download result
ls -l latest*.gz
-rw-rw-r-- 1 wf wf 123942927864 Apr 26 10:18 latest-all.ttl.gz
-rw-rw-r-- 1 wf wf 540610049 Apr 22 01:25 latest-lexemes.ttl.gz
download script
cat download.sh
#/bin/bash
# WF 2023-04-26
# download wikidata dumps
baseurl=https://dumps.wikimedia.org/wikidatawiki/entities/
for file in latest-all latest-lexemes
do
for ext in ttl.gz ttl.bz2
do
url=$baseurl/$file.$ext
log=$file-$ext.log
nohup wget $url >> $log&
done
done
download logs
latest-all.ttl.gz 123942927864 8h52m ✓
--2023-04-26 15:38:37-- https://dumps.wikimedia.org/wikidatawiki/entities//latest-all.ttl.gz
Resolving dumps.wikimedia.org (dumps.wikimedia.org)... 208.80.154.142, 2620:0:861:2:208:80:154:142
Connecting to dumps.wikimedia.org (dumps.wikimedia.org)|208.80.154.142|:443... connected.
HTTP request sent, awaiting response... 200 OK
Length: 123942927864 (115G) [application/octet-stream]
Saving to: ‘latest-all.ttl.gz’
0K .......... .......... .......... .......... .......... 0% 335K 4d4h
50K .......... .......... .......... .......... .......... 0% 220K 5d6h
100K .......... .......... .......... .......... .......... 0% 438K 4d14h
...
121037950K .......... .......... .......... .......... .......... 99% 3.91M 0s
121038000K .......... ..... 100% 181M=8h52m
2023-04-27 00:31:28 (3.70 MB/s) - ‘latest-all.ttl.gz’ saved [123942927864/123942927864]
latest-all.ttl.bz2 101383518288 7h27m ✓
--2023-04-26 15:38:37-- https://dumps.wikimedia.org/wikidatawiki/entities//latest-all.ttl.bz2
Resolving dumps.wikimedia.org (dumps.wikimedia.org)... 208.80.154.142, 2620:0:861:2:208:80:154:142
Connecting to dumps.wikimedia.org (dumps.wikimedia.org)|208.80.154.142|:443... connected.
HTTP request sent, awaiting response... 200 OK
Length: 101383518288 (94G) [application/octet-stream]
Saving to: ‘latest-all.ttl.bz2’
0K .......... .......... .......... .......... .......... 0% 219K 5d5h
50K .......... .......... .......... .......... .......... 0% 219K 5d5h
100K .......... .......... .......... .......... .......... 0% 437K 4d8h
99007250K .......... .......... .......... .......... .......... 99% 2.17M 0s
99007300K .......... .......... .......... .......... .. 100% 2.45M=7h27m
2023-04-26 23:06:17 (3.60 MB/s) - ‘latest-all.ttl.bz2’ saved [101383518288/101383518288]
latest-lexemes.ttl.gz 540610049 2m1s ✓
--2023-04-26 15:38:37-- https://dumps.wikimedia.org/wikidatawiki/entities//latest-lexemes.ttl.gz
Resolving dumps.wikimedia.org (dumps.wikimedia.org)... 208.80.154.142, 2620:0:861:2:208:80:154:142
Connecting to dumps.wikimedia.org (dumps.wikimedia.org)|208.80.154.142|:443... connected.
HTTP request sent, awaiting response... 200 OK
Length: 540610049 (516M) [application/octet-stream]
Saving to: ‘latest-lexemes.ttl.gz’
0K .......... .......... .......... .......... .......... 0% 355K 24m45s
50K .......... .......... .......... .......... .......... 0% 209K 33m23s
100K .......... .......... .......... .......... .......... 0% 416K 29m18s
527850K .......... .......... .......... .......... .......... 99% 62.1M 0s
527900K .......... .......... .......... ......... 100% 23.7M=2m1s
2023-04-26 15:40:39 (4.27 MB/s) - ‘latest-lexemes.ttl.gz’ saved [540610049/540610049]
latest-lexemes.ttl.bz2 43340123 1m45s ✓
attempt by script ❌
--2023-04-26 15:38:37-- https://dumps.wikimedia.org/wikidatawiki/entities//latest-lexemes.ttl.bz2
Resolving dumps.wikimedia.org (dumps.wikimedia.org)... 208.80.154.142, 2620:0:861:2:208:80:154:142
Connecting to dumps.wikimedia.org (dumps.wikimedia.org)|208.80.154.142|:443... connected.
HTTP request sent, awaiting response... 503 Service Temporarily Unavailable
2023-04-26 15:38:38 ERROR 503: Service Temporarily Unavailable.
manual retry latest-lexemes.ttl.bz2
wget https://dumps.wikimedia.org/wikidatawiki/entities/latest-lexemes.ttl.bz2
--2023-04-28 13:44:11-- https://dumps.wikimedia.org/wikidatawiki/entities/latest-lexemes.ttl.bz2
Resolving dumps.wikimedia.org (dumps.wikimedia.org)... 208.80.154.142, 2620:0:861:2:208:80:154:142
Connecting to dumps.wikimedia.org (dumps.wikimedia.org)|208.80.154.142|:443... connected.
HTTP request sent, awaiting response... 200 OK
Length: 433401231 (413M) [application/octet-stream]
Saving to: ‘latest-lexemes.ttl.bz2’
latest-lexemes.ttl. 9%[> ] 38.66M 4.19MB/s eta 1m 53
latest-lexemes.ttl. 100%[===================>] 413.32M 4.25MB/s in 1m 45s
2023-04-28 13:45:57 (3.93 MB/s) - ‘latest-lexemes.ttl.bz2’ saved [433401231/433401231]
Munging ~29 h
- https://github.com/wikimedia/wikidata-query-rdf/blob/master/docs/getting-started.md
- https://github.com/wikimedia/wikidata-query-deploy/blob/master/munge.sh
Preparation ~20-30 min
Needed installs and settings
sudo apt install openjdk-11-jdk-headless
sudo apt install maven
export JAVA_HOME=$(update-alternatives --query javadoc | grep Value: | head -n1 | sed 's/Value: //' | sed 's@bin/javadoc$@@')
echo $JAVA_HOME
/usr/lib/jvm/java-11-openjdk-amd64/
clone and package
had to start mvn package twice since javadoc was not available JAVA_HOME was not set on first try
git clone https://gerrit.wikimedia.org/r/wikidata/query/rdf wikidata-query-rdf
Cloning into 'wikidata-query-rdf'...
remote: Counting objects: 111, done
remote: Total 26684 (delta 0), reused 26684 (delta 0)
Receiving objects: 100% (26684/26684), 4.84 MiB | 3.23 MiB/s, done.
Resolving deltas: 100% (13928/13928), done.
cd wikidata-query-rdf/
mvn package
[INFO] Building jar: /home/wf/wikidata-query-rdf/common/target/wikidata-query-common-0.3.124-SNAPSHOT.jar
[INFO]
[INFO] --- maven-javadoc-plugin:3.2.0:jar (attach-javadocs) @ common ---
[INFO] ------------------------------------------------------------------------
[INFO] Reactor Summary for Wikidata Query Service 0.3.124-SNAPSHOT:
[INFO]
[INFO] Wikidata Query Service ............................. SUCCESS [ 19.204 s]
...
[INFO] --- maven-assembly-plugin:3.3.0:single (default) @ service ---
[INFO] Reading assembly descriptor: src/assembly/dist.xml
[INFO] Building tar: /home/wf/wikidata-query-rdf/dist/target/service-0.3.124-SNAPSHOT-dist.tar.gz
[INFO] ------------------------------------------------------------------------
[INFO] Reactor Summary for Wikidata Query Service 0.3.124-SNAPSHOT:
[INFO]
[INFO] Wikidata Query Service ............................. SUCCESS [ 1.904 s]
[INFO] Shared code ........................................ SUCCESS [ 4.798 s]
[INFO] Wikidata Query RDF Testing Tools ................... SUCCESS [ 15.411 s]
[INFO] Jetty logging dependencies ......................... SUCCESS [ 37.577 s]
[INFO] Blazegraph extension to improve performance for Wikibase SUCCESS [03:14 min]
[INFO] Blazegraph Service Package ......................... SUCCESS [ 33.788 s]
[INFO] Wikidata Query RDF Tools ........................... SUCCESS [01:13 min]
[INFO] Wikidata Query Service Streaming Updater - Common .. SUCCESS [ 4.758 s]
[INFO] Wikidata Query Service Streaming Updater - Producer SUCCESS [04:34 min]
[INFO] Wikidata Query Service Streaming Updater - Consumer SUCCESS [ 7.982 s]
[INFO] MediaWiki OAuth 1.0a Proxy Service ................. SUCCESS [ 37.591 s]
[INFO] rdf-spark-tools .................................... SUCCESS [09:44 min]
[INFO] Wikibase RDF Query Service ......................... SUCCESS [ 10.378 s]
[INFO] ------------------------------------------------------------------------
[INFO] BUILD SUCCESS
[INFO] ------------------------------------------------------------------------
[INFO] Total time: 21:21 min
[INFO] Finished at: 2023-04-29T14:05:59+02:00
[INFO] ------------------------------------------------------------------------
check dist
cd dist/target
~/wikidata-query-rdf/dist/target$ tar tvfz service-0.3.124-SNAPSHOT-dist.tar.gz
drwxrwxr-x wf/wf 0 2023-04-29 13:32 service-0.3.124-SNAPSHOT/
-rw-rw-r-- wf/wf 1170 2023-04-29 13:32 service-0.3.124-SNAPSHOT/prefixes-sdc.conf
-rwxrwxr-x wf/wf 1277 2023-04-29 13:32 service-0.3.124-SNAPSHOT/wcqs-data-reload.sh
-rwxrwxr-x wf/wf 2656 2023-04-29 13:32 service-0.3.124-SNAPSHOT/runUpdate.sh
-rwxrwxr-x wf/wf 599 2023-04-29 13:32 service-0.3.124-SNAPSHOT/createNamespace.sh
-rw-rw-r-- wf/wf 1483 2023-04-29 13:32 service-0.3.124-SNAPSHOT/default.properties
-rwxrwxr-x wf/wf 6470 2023-04-29 13:32 service-0.3.124-SNAPSHOT/runBlazegraph.sh
-rwxrwxr-x wf/wf 1345 2023-04-29 13:32 service-0.3.124-SNAPSHOT/loadRestAPI.sh
-rwxrwxr-x wf/wf 490 2023-04-29 13:32 service-0.3.124-SNAPSHOT/forAllCategoryWikis.sh
-rwxrwxr-x wf/wf 857 2023-04-29 13:32 service-0.3.124-SNAPSHOT/munge.sh
-rwxrwxr-x wf/wf 1133 2023-04-29 13:32 service-0.3.124-SNAPSHOT/loadCategoryDaily.sh
-rwxrwxr-x wf/wf 882 2023-04-29 13:32 service-0.3.124-SNAPSHOT/loadData.sh
-rw-rw-r-- wf/wf 3412 2023-04-29 13:32 service-0.3.124-SNAPSHOT/RWStore.properties
-rw-rw-r-- wf/wf 315 2023-04-29 13:32 service-0.3.124-SNAPSHOT/prefixes.conf
-rw-rw-r-- wf/wf 2202 2023-04-29 13:32 service-0.3.124-SNAPSHOT/ldf-config.json
-rwxrwxr-x wf/wf 949 2023-04-29 13:32 service-0.3.124-SNAPSHOT/loadCategoryDump.sh
-rwxrwxr-x wf/wf 181 2023-04-29 13:32 service-0.3.124-SNAPSHOT/summarizeEvents.sh
-rw-rw-r-- wf/wf 2307 2023-04-29 13:32 service-0.3.124-SNAPSHOT/mwservices.json
-rwxrwxr-x wf/wf 2167 2023-04-29 13:32 service-0.3.124-SNAPSHOT/runStreamingUpdater.sh
-rw-rw-r-- wf/wf 20669767 2023-04-29 13:50 service-0.3.124-SNAPSHOT/lib/wikidata-query-tools-0.3.124-SNAPSHOT-jar-with-dependencies.jar
-rw-rw-r-- wf/wf 20713599 2023-04-29 13:55 service-0.3.124-SNAPSHOT/lib/streaming-updater-consumer-0.3.124-SNAPSHOT-jar-with-dependencies.jar
-rw-rw-r-- wf/wf 34014443 2023-04-29 13:55 service-0.3.124-SNAPSHOT/lib/streaming-updater-producer-0.3.124-SNAPSHOT-jar-with-dependencies.jar
-rw-rw-r-- wf/wf 6143989 2023-04-29 13:45 service-0.3.124-SNAPSHOT/lib/logging/jetty-logging-0.3.124-SNAPSHOT-jar-with-dependencies.jar
drwxrwxr-x wf/wf 0 2023-04-29 13:32 service-0.3.124-SNAPSHOT/docs/
drwxrwxr-x wf/wf 0 2023-04-29 13:32 service-0.3.124-SNAPSHOT/docs/diagrams/
-rw-rw-r-- wf/wf 11435 2023-04-29 13:32 service-0.3.124-SNAPSHOT/docs/sparql-query-examples.md
-rw-rw-r-- wf/wf 9803 2023-04-29 13:32 service-0.3.124-SNAPSHOT/docs/exploring-linked-data.md
-rw-rw-r-- wf/wf 11358 2023-04-29 13:32 service-0.3.124-SNAPSHOT/docs/LICENSE.Apache
-rw-rw-r-- wf/wf 17986 2023-04-29 13:32 service-0.3.124-SNAPSHOT/docs/LICENSE.GPL
-rw-rw-r-- wf/wf 877 2023-04-29 13:32 service-0.3.124-SNAPSHOT/docs/diagrams/streaming-updater-components.puml
-rw-rw-r-- wf/wf 740 2023-04-29 13:32 service-0.3.124-SNAPSHOT/docs/diagrams/streaming-updater-sequence.puml
-rw-rw-r-- wf/wf 1086 2023-04-29 13:32 service-0.3.124-SNAPSHOT/docs/diagrams/wdqs-high-level.puml
-rw-rw-r-- wf/wf 1556 2023-04-29 13:32 service-0.3.124-SNAPSHOT/docs/diagrams/streaming-updater-deployment.puml
-rw-rw-r-- wf/wf 3014 2023-04-29 13:32 service-0.3.124-SNAPSHOT/docs/getting-started.md
-rw-rw-r-- wf/wf 341 2023-04-29 13:32 service-0.3.124-SNAPSHOT/docs/TODO.md
-rw-rw-r-- wf/wf 1546 2023-04-29 13:32 service-0.3.124-SNAPSHOT/docs/configs.md
-rw-rw-r-- wf/wf 476 2023-04-29 13:32 service-0.3.124-SNAPSHOT/docs/Categories.md
-rw-rw-r-- wf/wf 79416954 2023-04-29 13:49 service-0.3.124-SNAPSHOT/blazegraph-service-0.3.124-SNAPSHOT.war
-rw-rw-r-- wf/wf 9809699 2023-04-29 13:56 service-0.3.124-SNAPSHOT/mw-oauth-proxy-0.3.124-SNAPSHOT.war
-rw-rw-r-- wf/wf 7074499 2023-04-29 13:40 service-0.3.124-SNAPSHOT/jetty-runner-9.4.12.v20180830.jar
Unpack and make available via symlink
tar xvfz service-0.3.124-SNAPSHOT-dist.tar.gz
# in target directory
ln -s /home/wf/wikidata-query-rdf/dist/target/service-0.3.124-SNAPSHOT service
calling munge.sh
domunge.sh
#!/bin/bash
# WF 2023-04-29
# start munge in background
bzcat latest-all.ttl.bz2 | service/munge.sh -f - -d data -- --skolemize
start domunge.sh and show nohup.out log
nohup ./domunge.sh &
tail -f nohup.out
#logback.classic pattern: %d{HH:mm:ss.SSS} [%thread] %-5level %logger{36} - %msg%n
14:23:31.529 [org.wikidata.query.rdf.tool.rdf.AsyncRDFHandler$RDFActionsReplayer] INFO org.wikidata.query.rdf.tool.Munge - Switching to data/wikidump-000000001.ttl.gz
14:24:17.795 [org.wikidata.query.rdf.tool.rdf.AsyncRDFHandler$RDFActionsReplayer] INFO o.w.q.r.t.r.EntityMungingRdfHandler - Processed 10000 entities at (154, 93, 79)
...
17:10:05.507 [org.wikidata.query.rdf.tool.rdf.AsyncRDFHandler$RDFActionsReplayer] INFO o.w.q.r.t.r.EntityMungingRdfHandler - Processed 10000000 entities at (936, 919, 1011)
...
19:56:14.353 [org.wikidata.query.rdf.tool.rdf.AsyncRDFHandler$RDFActionsReplayer] INFO o.w.q.r.t.r.EntityMungingRdfHandler - Processed 20000000 entities at (1191, 1097, 979)
...
22:21:33.096 [org.wikidata.query.rdf.tool.rdf.AsyncRDFHandler$RDFActionsReplayer] INFO o.w.q.r.t.r.EntityMungingRdfHandler - Processed 30000000 entities at (1228, 1136, 1221)
...
01:10:14.808 [org.wikidata.query.rdf.tool.rdf.AsyncRDFHandler$RDFActionsReplayer] INFO o.w.q.r.t.r.EntityMungingRdfHandler - Processed 40000000 entities at (766, 764, 988)
...
03:55:33.809 [org.wikidata.query.rdf.tool.rdf.AsyncRDFHandler$RDFActionsReplayer] INFO o.w.q.r.t.r.EntityMungingRdfHandler - Processed 50000000 entities at (786, 779, 893)
...
06:38:44.146 [org.wikidata.query.rdf.tool.rdf.AsyncRDFHandler$RDFActionsReplayer] INFO o.w.q.r.t.r.EntityMungingRdfHandler - Processed 60000000 entities at (1343, 1272, 1081)
...
09:07:55.295 [org.wikidata.query.rdf.tool.rdf.AsyncRDFHandler$RDFActionsReplayer] INFO o.w.q.r.t.r.EntityMungingRdfHandler - Processed 70000000 entities at (527, 804, 1053)
...
11:56:15.113 [org.wikidata.query.rdf.tool.rdf.AsyncRDFHandler$RDFActionsReplayer] INFO o.w.q.r.t.r.EntityMungingRdfHandler - Processed 80000000 entities at (1103, 944, 993)
...
14:40:23.875 [org.wikidata.query.rdf.tool.rdf.AsyncRDFHandler$RDFActionsReplayer] INFO o.w.q.r.t.r.EntityMungingRdfHandler - Processed 90000000 entities at (903, 850, 889)
...
17:19:18.387 [org.wikidata.query.rdf.tool.rdf.AsyncRDFHandler$RDFActionsReplayer] INFO o.w.q.r.t.r.EntityMungingRdfHandler - Processed 100000000 entities at (1416, 1392, 1182)
...
18:42:24.907 [org.wikidata.query.rdf.tool.rdf.AsyncRDFHandler$RDFActionsReplayer] INFO o.w.q.r.t.r.EntityMungingRdfHandler - Processed 105730000 entities at (2206, 1688, 1409)check created munge files
grep gz nohup.out | cut -f9 -d" " | tail -5
data/wikidump-000001054.ttl.gz
data/wikidump-000001055.ttl.gz
data/wikidump-000001056.ttl.gz
data/wikidump-000001057.ttl.gz
data/wikidump-000001058.ttl.gz
du -sm data/split/
109978 data/split/
inspect a sample file
zcat data/wikidump-000000702.ttl.gz | head -40
@prefix rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> .
@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .
@prefix ontolex: <http://www.w3.org/ns/lemon/ontolex#> .
@prefix dct: <http://purl.org/dc/terms/> .
@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
@prefix owl: <http://www.w3.org/2002/07/owl#> .
@prefix wikibase: <http://wikiba.se/ontology#> .
@prefix skos: <http://www.w3.org/2004/02/skos/core#> .
@prefix schema: <http://schema.org/> .
@prefix cc: <http://creativecommons.org/ns#> .
@prefix geo: <http://www.opengis.net/ont/geosparql#> .
@prefix prov: <http://www.w3.org/ns/prov#> .
@prefix wd: <http://www.wikidata.org/entity/> .
@prefix data: <https://www.wikidata.org/wiki/Special:EntityData/> .
@prefix s: <http://www.wikidata.org/entity/statement/> .
@prefix ref: <http://www.wikidata.org/reference/> .
@prefix v: <http://www.wikidata.org/value/> .
@prefix wdt: <http://www.wikidata.org/prop/direct/> .
@prefix wdtn: <http://www.wikidata.org/prop/direct-normalized/> .
@prefix p: <http://www.wikidata.org/prop/> .
@prefix ps: <http://www.wikidata.org/prop/statement/> .
@prefix psv: <http://www.wikidata.org/prop/statement/value/> .
@prefix psn: <http://www.wikidata.org/prop/statement/value-normalized/> .
@prefix pq: <http://www.wikidata.org/prop/qualifier/> .
@prefix pqv: <http://www.wikidata.org/prop/qualifier/value/> .
@prefix pqn: <http://www.wikidata.org/prop/qualifier/value-normalized/> .
@prefix pr: <http://www.wikidata.org/prop/reference/> .
@prefix prv: <http://www.wikidata.org/prop/reference/value/> .
@prefix prn: <http://www.wikidata.org/prop/reference/value-normalized/> .
@prefix wdno: <http://www.wikidata.org/prop/novalue/> .
<https://ceb.wikipedia.org/wiki/R%C3%ADo_Pitara> a schema:Article ;
schema:about wd:Q35416151 ;
schema:inLanguage "ceb" ;
schema:isPartOf <https://ceb.wikipedia.org/> ;
schema:name "Río Pitara"@ceb .
wd:Q35416151 wdt:P625 "Point(-67.2225 9.3544444444444)"^^geo:wktLiteral ;
wdt:P31 wd:Q47521 ;
wdt:P1566 "3630072" ;
see https://www.wikidata.org/wiki/Q35416151
Loading
move files to split directory
We didn't quite follow the getting started - so fix the location of the munged files
mkdir split
wikidata/data$ mv wiki* split
prepare log directory
sudo mkdir -p /var/log/wdqs/
sudo chown $(id -un) /var/log/wdqs/
mv service to TB harddisk
mv service s
mkdir service
mv s/* service
rm s
start blazegraph
nohup service/runBlazegraph.sh 2>&1 > blazegraph.log&
loadall.sh
This is the script i used in 2018:
#!/usr/bin/env bash
# load all data
START=1
END=100000
FORMAT=wikidump-%09d.ttl.gz
LOCATION=$(pwd)/data/split
BASE=$(dirname $0)
cd $BASE
while getopts s:e:d:h option
do
case "${option}"
in
s) START=${OPTARG};;
e) END=${OPTARG};;
d) LOCATION=${OPTARG};;
h)
echo "Usage: $0 [-s <start>] [-e <end>] [-d <directory>] [-h]"
exit 1
;;
esac
done
i=$START
while [ $i -le $END ]; do
printf -v f $FORMAT $i
if [ -f "$LOCATION/$f.good" ]
then
echo File $LOCATION/$f already imported
else
if [ ! -f "$LOCATION/$f" ]
then
echo File $LOCATION/$f not found, terminating
exit 0
else
ts=$(date -Iseconds)
echo Processing $f at $ts
./loadRestAPI.sh -n wdq -d "$LOCATION/$f"
fi
fi
let i++
done
load
nohup service/loadRestAPI.sh -n wdq -d `pwd`/data/split&
Logfile issue
The logfile size grows far too quickly with the default log settings.
For testing i reactivated my 128 GB RAM machine i used for the QLever tests last year.
Download munge files
cat data/split/getall
#!/bin/bash
# WF 2023-05-02
base=http://wikidata.dbis.rwth-aachen.de/downloads/split/
for i in {0001..1058}
do
file=wikidump-00000$i.ttl.gz
url=$base/wikidump-00000$i.ttl.gz
if [ ! -f $file ]
then
wget $url
else
echo "$file ✅"
fi
done
Run load for a single file
service/loadall.sh -s 1 -e 1
Processing wikidump-000000001.ttl.gz at 2023-05-02T18:31:50+02:00
Loading with properties...
quiet=false
verbose=0
closure=false
durableQueues=true
#Needed for quads
#defaultGraph=
com.bigdata.rdf.store.DataLoader.flush=false
com.bigdata.rdf.store.DataLoader.bufferCapacity=100000
com.bigdata.rdf.store.DataLoader.queueCapacity=10
#Namespace to load
namespace=wdq
#Files to load
fileOrDirs=/hd/seel/wikidata/data/split/wikidump-000000001.ttl.gz
#Property file (if creating a new namespace)
propertyFile=/hd/seel/wikidata/service/RWStore.properties
Check size of log file
The log file size grows at 26 MByte/s - that is far too much. E.g. this smaller 128 GB testmachine only has a 2TB SSD in the first place.
date;du -sm blazegraph.log;
Di 2. Mai 18:37:00 CEST 2023
9603 blazegraph.log
date;du -sm blazegraph.log;
Di 2. Mai 18:37:02 CEST 2023
9637 blazegraph.log
date;du -sm blazegraph.log;
Di 2. Mai 18:37:51 CEST 2023
10951 blazegraph.log
Logback.xml candidates
Generated from ERB template
generated from https://github.com/wikimedia/operations-puppet/blob/production/modules/query_service/templates/logback.xml.erb:
logback.xml
<?xml version="1.0" encoding="UTF-8"?>
<configuration scan="true" scanPeriod="5 minutes" packagingData="false">
<!-- ugly trick to ensure ${HOSTNAME} is evaluated -->
<property scope="context" name="hostname" value="${HOSTNAME}" />
<!--
File based logs:
* rolling every day or when size > 100MB
-->
<appender name="file" class="ch.qos.logback.core.rolling.RollingFileAppender">
<file>PATH/TO/LOGS/rdf-query-service.log</file>
<rollingPolicy class="ch.qos.logback.core.rolling.SizeAndTimeBasedRollingPolicy">
<!-- daily rollover -->
<fileNamePattern>PATH/TO/LOGS/rdf-query-service.%d{yyyy-MM-dd}.%i.log.gz</fileNamePattern>
<maxFileSize>100MB</maxFileSize>
<maxHistory>30</maxHistory>
</rollingPolicy>
<filter class="org.wikidata.query.rdf.common.log.PerLoggerThrottler" />
<encoder class="ch.qos.logback.classic.encoder.PatternLayoutEncoder">
<pattern>%d{HH:mm:ss.SSS} [%thread] %-5level %logger{36} - %msg %mdc%n%rEx{1,QUERY_TIMEOUT,SYNTAX_ERROR}</pattern>
<outputPatternAsHeader>true</outputPatternAsHeader>
</encoder>
</appender>
<appender name="async-file" class="ch.qos.logback.classic.AsyncAppender">
<neverBlock>true</neverBlock>
<appender-ref ref="file" />
</appender>
<!--
Console based logs:
* per logger / message throttling is enabled
* limited to 10 messages per second
* level => ERROR
-->
<appender name="stdout" class="ch.qos.logback.core.ConsoleAppender">
<filter class="org.wikidata.query.rdf.common.log.PerLoggerThrottler" />
<filter class="org.wikidata.query.rdf.common.log.RateLimitFilter">
<bucketCapacity>10</bucketCapacity>
<refillIntervalInMillis>1000</refillIntervalInMillis>
</filter>
<filter class="ch.qos.logback.classic.filter.ThresholdFilter">
<level>error</level>
</filter>
<encoder class="ch.qos.logback.classic.encoder.PatternLayoutEncoder">
<pattern>%d{HH:mm:ss.SSS} [%thread] %-5level %logger{36} - %msg %mdc%n%rEx{1,QUERY_TIMEOUT,SYNTAX_ERROR}</pattern>
<outputPatternAsHeader>true</outputPatternAsHeader>
</encoder>
</appender>
<appender name="async-stdout" class="ch.qos.logback.classic.AsyncAppender">
<neverBlock>true</neverBlock>
<appender-ref ref="stdout" />
</appender>
<root level="info">
<appender-ref ref="async-file"/>
<appender-ref ref="async-stdout"/>
</root>
<logger name="org.wikidata.query.rdf" level="info"/>
<logger name="org.wikidata.query.rdf.blazegraph.inline.literal.AbstractMultiTypeExtension" level="error"/>
<logger name="com.bigdata" level="warn"/>
<logger name="com.bigdata.util.concurrent.Haltable" level="off"/>
<logger name="com.bigdata.rdf.internal.LexiconConfiguration" level="off"/> <!-- disabled temp. ref: T207643 -->
</configuration>
Sample configuration
sample from https://logback.qos.ch/manual/configuration.html:
<configuration>
<appender name="STDOUT" class="ch.qos.logback.core.ConsoleAppender">
<!-- encoders are assigned the type
ch.qos.logback.classic.encoder.PatternLayoutEncoder by default -->
<encoder>
<pattern>%d{HH:mm:ss.SSS} [%thread] %-5level %logger{36} -%kvp- %msg%n</pattern>
</encoder>
</appender>
<root level="debug">
<appender-ref ref="STDOUT" />
</root>
</configuration>
retries
with simple logback.xml according to
export LOG_CONFIG=/hd/seel/wikidata/logback.xml
nohup service/runBlazegraph.sh 2>&1 > blazegraph.log&
service/loadall.sh -s 1 -e 1
date;du -sm blazegraph.log
Di 2. Mai 19:15:40 CEST 2023
1630 blazegraph.log
du -sm blazegraph.log
Di 2. Mai 19:15:42 CEST 2023
1654 blazegraph.log
with pasted logback.xml
hd is seel on sun and eneco on dbis wikidata
pgrep -fl java
66671 java
kill 66671
rm service/wikidata.jnl
wget https://phab.wmfusercontent.org/file/data/cz4q6ew7kksba6k5ocyx/PHID-FILE-eevhah5inj6jl2sy3nas/basic_rdf_query_service_logback.xml
export LOG_CONFIG=/hd/eneco/wikidata/basic_rdf_query_service_logback.xml
ls -l $(echo $LOG_CONFIG)
-rw-rw-r-- 1 wf wf 3030 May 3 09:23 /hd/eneco/wikidata/basic_rdf_query_service_logback.xml
nohup service/runBlazegraph.sh 2>&1 > blazegraph.log&
wf@sun:/hd/seel/wikidata/data/split$ mv wikidump-000000001.ttl.gz.fail wikidump-000000001.ttl.gz
service/loadall.sh -s 1 -e 1
# in another terminal:
...
date;du -sm service/wikidata.jnl
Di 2. Mai 19:28:12 CEST 2023
1530 service/wikidata.jnl
date;du -sm service/wikidata.jnl
Di 2. Mai 19:28:15 CEST 2023
1557 service/wikidata.jnl
<?xml version="1.0"?><data modified="0" milliseconds="483615"/>
wikidump-000000001.ttl.gz.good
with fixed logback.xml
check fix
diff logback.xml basic_rdf_query_service_logback.xml
12c12
< <file>/var/log/wdqs/rdf-query-service.log</file>
---
> <file>PATH/TO/LOGS/rdf-query-service.log</file>
15c15
< <fileNamePattern>/var/log/wdqs/rdf-query-service.%d{yyyy-MM-dd}.%i.log.gz</fileNamePattern>
---
> <fileNamePattern>PATH/TO/LOGS/rdf-query-service.%d{yyyy-MM-dd}.%i.log.gz</fileNamePattern>
restart blazegraph
pgrep -fla blazegraph-service
pkill -f blazegraph-service
rm blazegraph.log
export LOG_CONFIG=/hd/eneco/wikidata/logback.xml
nohup service/runBlazegraph.sh 2>&1 > blazegraph.log&