Difference between revisions of "DgraphAndWeaviateTest"

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}}
 
}}
  
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This is sample project to test Python based access to {{Link|target=Dgraph}}, {{Link|target=Weaviate}}
+
This is sample project to test Python based storage with
−
and {{Link|target=Apache Jena}}
+
* {{Link|target=Dgraph}}
 +
* {{Link|target=Weaviate}}
 +
* {{Link|target=Apache Jena}}
 +
* [https://www.sqlite.org/index.html sqlite]
 +
 
 +
The motivation for this project was the [[ProceedingsTitleParser#Choice_of_Database.2FStorage_system|Choice of a Database storage system]] for the {{Link|target=ProceedingsTitleParser}}
  
 
= Installation and test =
 
= Installation and test =
 +
== Prerequisites ==
 +
* [https://www.python.org/ python] > version 3.6 - tested with version 3.6/3.7/3.8
 +
* [https://www.docker.com/ docker] e.g. docker desktop community - tested with e.g. docker desktop 2.3.0.4 Docker version 19.03.12
 +
* [https://openjdk.java.net/ java] e.g. openjdk - tested with Java 1.8 and Java 11
 +
* Operating system that can run bash scripts e.g. macports, linux - tested on Mac OS 10.13.6 Macports 2.6.2, Ubuntu 18.04 LTS
 +
 
== Installation ==
 
== Installation ==
 
<source lang='bash'>
 
<source lang='bash'>
Line 35: Line 46:
 
# run apache jena fuseki server
 
# run apache jena fuseki server
 
scripts/jena -f example
 
scripts/jena -f example
 +
</source>
 +
== Test ==
 +
<source lang='bash'>
 +
scripts/test
 +
</source>
 +
= Sample Data =
 +
== UML ==
 +
<uml>
 +
package Royals {
 +
  entity Person {
 +
    name : TEXT <<PK>>
 +
    born : DATE
 +
    numberInLine : INTEGER
 +
    wikidataurl : TEXT
 +
    age : FLOAT
 +
    ofAge : BOOLEAN
 +
    lastmodified : TIMESTAMP
 +
  }
 +
}
 +
</uml>
 +
== Python ==
 +
<source lang='python'>
 +
@staticmethod
 +
    def getRoyals():
 +
        listOfDicts=[
 +
            {'name': 'Elizabeth Alexandra Mary Windsor', 'born': Sample.dob('1926-04-21'), 'numberInLine': 0, 'wikidataurl': 'https://www.wikidata.org/wiki/Q9682' },
 +
            {'name': 'Charles, Prince of Wales',        'born': Sample.dob('1948-11-14'), 'numberInLine': 1, 'wikidataurl': 'https://www.wikidata.org/wiki/Q43274' },
 +
            {'name': 'George of Cambridge',              'born': Sample.dob('2013-07-22'), 'numberInLine': 3, 'wikidataurl': 'https://www.wikidata.org/wiki/Q1359041'},
 +
            {'name': 'Harry Duke of Sussex',            'born': Sample.dob('1984-09-15'), 'numberInLine': 6, 'wikidataurl': 'https://www.wikidata.org/wiki/Q152316'}
 +
        ]
 +
        today=date.today()
 +
        for person in listOfDicts:
 +
            born=person['born']
 +
            age=(today - born).days / 365.2425
 +
            person['age']=age
 +
            person['ofAge']=age>=18
 +
            person['lastmodified']=datetime.now()
 +
        return listOfDicts
 +
</source>
 +
 +
= Weaviate =
 +
== Weaviate start ==
 +
<source lang='bash'>
 +
scripts/weaviate
 
</source>
 
</source>
  
 +
= Dgraph =
 
== Dgraph Installation ==
 
== Dgraph Installation ==
 
docker based pull:
 
docker based pull:
Line 66: Line 122:
 
</source>
 
</source>
  
−
= Example unit test =
+
= Issues, Questions and Answers =
−
== Dgraph unit test ==
+
== Issues ==
−
<source lang='python'>
+
* https://github.com/semi-technologies/weaviate/issues/1215
−
def testDgraph(self):
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* https://discuss.dgraph.io/t/dgraph-v20-07-0-v20-03-0-unreliability-in-mac-os-environment/9376/14
−
        '''
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* https://discuss.dgraph.io/t/input-for-predicate-location-of-type-scalar-is-uid/9381
−
        test basic Dgraph operation
+
 
−
        '''
+
== Stackoverflow questions ==
−
        dgraph=Dgraph(debug=True)
+
* https://stackoverflow.com/questions/63486767/how-can-i-get-the-fuseki-api-via-sparqlwrapper-to-properly-report-a-detailed-err
−
        # drop all data and schemas
+
* https://stackoverflow.com/questions/63435157/listofdict-to-rdf-conversion-in-python-targeting-apache-jena-fuseki
−
        dgraph.drop_all()
+
* https://stackoverflow.com/questions/63358495/how-to-delete-all-nodes-with-a-given-type
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        # create a schema for Pokemons
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* https://stackoverflow.com/questions/63260073/starting-zero-alpha-and-ratel-in-a-single-command-e-g-in-macosx-and-other-envir
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        schema='''
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* https://stackoverflow.com/questions/63098344/weaviate-error-code-400-parsing-body-from-failed-invalid-character-g-looki
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        name: string @index(exact) .
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* https://stackoverflow.com/questions/63075787/translating-sidif-to-weaviate
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        weight: float .
+
 
−
        height: float .
+
== Stackoverflow answers ==
−
type Pokemon {
+
* https://stackoverflow.com/questions/63435157/listofdict-to-rdf-conversion-in-python-targeting-apache-jena-fuseki/63440396#63440396#
−
  name
+
* https://stackoverflow.com/questions/63358495/how-to-delete-all-nodes-with-a-given-type/63358827#63358827
−
  weight
+
* https://stackoverflow.com/questions/63260073/starting-zero-alpha-and-ratel-in-a-single-command-e-g-in-macosx-and-other-envir/63265154#63265154
−
  height
+
 
−
}'''
+
= Example unit tests =
−
        dgraph.addSchema(schema)
+
 
−
        # prepare a list of Pokemons to be added
 
−
        pokemonList=[{'name':'Pikachu', 'weight':  6, 'height': 0.4 },
 
−
                  {'name':'Arbok',  'weight': 65, 'height': 3.5 },
 
−
                  {'name':'Raichu',  'weight': 30, 'height': 0.8 },
 
−
                  {'name':'Sandan',  'weight': 12, 'height': 0.6 }]
 
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        # add the list in a single transaction
 
−
        dgraph.addData(obj=pokemonList)
 
−
        # retrieve the data via GraphQL+ query
 
−
        graphQuery='''{
 
−
# list of pokemons
 
−
  pokemons(func: has(name), orderasc: name) {
 
−
    name
 
−
    weight
 
−
    height
 
−
  }
 
−
}'''
 
−
        queryResult=dgraph.query(graphQuery)
 
−
        # check the result
 
−
        self.assertTrue('pokemons' in queryResult)
 
−
        pokemons=queryResult['pokemons']
 
−
        self.assertEqual(len(pokemonList),len(pokemons))
 
−
        sortindex=[1,0,2,3]
 
−
        for index,pokemon in enumerate(pokemons):
 
−
            expected=pokemonList[sortindex[index]]
 
−
            self.assertEquals(expected,pokemon)
 
−
        # close the database connection
 
−
        dgraph.close()
 
−
</source>
 
  
 
== Example test session ==
 
== Example test session ==
 
see https://travis-ci.org/github/WolfgangFahl/DgraphAndWeaviateTest/jobs/715131236
 
see https://travis-ci.org/github/WolfgangFahl/DgraphAndWeaviateTest/jobs/715131236

Latest revision as of 08:05, 22 September 2020

OsProject

OsProject
edit
id  DgraphAndWeaviateTest
state  
owner  Wolfgang Fahl
title  DgraphAndWeaviateTest
url  https://github.com/WolfgangFahl/DgraphAndWeaviateTest
version  0.0.1
description  
date  2020/08/05
since  
until  

This is sample project to test Python based storage with

The motivation for this project was the Choice of a Database storage system for the ProceedingsTitleParser

Installation and test

Prerequisites

  • python > version 3.6 - tested with version 3.6/3.7/3.8
  • docker e.g. docker desktop community - tested with e.g. docker desktop 2.3.0.4 Docker version 19.03.12
  • java e.g. openjdk - tested with Java 1.8 and Java 11
  • Operating system that can run bash scripts e.g. macports, linux - tested on Mac OS 10.13.6 Macports 2.6.2, Ubuntu 18.04 LTS

Installation

https://github.com/WolfgangFahl/DgraphAndWeaviateTest
cd DgraphAndWeaviateTest
scripts/install

Starting servers

see also DgraphAndWeaviateTest 

# command to run Dgraph
# pull dgraph
scripts/dgraph -p
# run dgraph
scripts/dgraph
# pull and run weaviate
scripts/weaviate
# install apache jena and load example data
scripts/jena -l sampledata/example.ttl
# run apache jena fuseki server
scripts/jena -f example

Test

scripts/test

Sample Data

UML

Python

@staticmethod
    def getRoyals():
        listOfDicts=[
            {'name': 'Elizabeth Alexandra Mary Windsor', 'born': Sample.dob('1926-04-21'), 'numberInLine': 0, 'wikidataurl': 'https://www.wikidata.org/wiki/Q9682' },
            {'name': 'Charles, Prince of Wales',         'born': Sample.dob('1948-11-14'), 'numberInLine': 1, 'wikidataurl': 'https://www.wikidata.org/wiki/Q43274' },
            {'name': 'George of Cambridge',              'born': Sample.dob('2013-07-22'), 'numberInLine': 3, 'wikidataurl': 'https://www.wikidata.org/wiki/Q1359041'},
            {'name': 'Harry Duke of Sussex',             'born': Sample.dob('1984-09-15'), 'numberInLine': 6, 'wikidataurl': 'https://www.wikidata.org/wiki/Q152316'}
        ]
        today=date.today()
        for person in listOfDicts:
            born=person['born']
            age=(today - born).days / 365.2425
            person['age']=age
            person['ofAge']=age>=18
            person['lastmodified']=datetime.now()
        return listOfDicts

Weaviate

Weaviate start

scripts/weaviate

Dgraph

Dgraph Installation

docker based pull: 

scripts/dgraph -p

Dgraph start

docker based start of

  • alpha
  • ratel
  • zero
scripts/dgraph

Dgraph stop

scripts/dgraph -k

scripts/dgraph usage

scripts/dgraph -h
scripts/dgraph [-b|--bash|-c|--clean|-h|--help|-k|--kill|-p|--pull]

-b | --bash: start a bash terminal shell within the currently running container
-h | --help: show this usage
-k | --kill: stop the docker image
-p | --pull: pull the docker image
-c | --clean: clean start with kill and purge of all data

Issues, Questions and Answers

Issues

Stackoverflow questions

Stackoverflow answers

Example unit tests

Example test session

see https://travis-ci.org/github/WolfgangFahl/DgraphAndWeaviateTest/jobs/715131236

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